Survival-associated meQTLs across different cancer types
We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| PAAD | rs11245875 | chr11:50754477 | G/A | 0 | 176 | 15.48 | 15.53 | 0.35 | KM Plot |
| PAAD | rs11245876 | chr11:50755041 | C/T | 0 | 176 | 15.48 | 15.53 | 0.35 | KM Plot |
| PAAD | rs11245878 | chr11:50756950 | T/C | 0 | 176 | 15.48 | 15.53 | 0.35 | KM Plot |
| PAAD | rs11248872 | chr16:1394551 | A/G | 1.29E-5 | 178 | 3.67 | 15.55 | 15.43 | KM Plot |
| PAAD | rs112509261 | chr2:70444436 | G/T | 0 | 178 | 15.33 | 18.43 | 1.03 | KM Plot |
| PAAD | rs11251710 | chr10:3130773 | A/G | 0.000161 | 178 | 8.13 | 16.07 | 15.42 | KM Plot |
| PAAD | rs112554300 | chr19:36013041 | A/G | 5.81E-5 | 173 | 15.67 | 15.27 | 4.1 | KM Plot |
| PAAD | rs112592783 | chr17:70633625 | C/T | 4.79E-6 | 172 | 14.47 | 16.6 | 5.1 | KM Plot |
| PAAD | rs112605760 | chr11:125726353 | G/A | 0.000114 | 175 | 15.87 | 12.2 | 4.1 | KM Plot |
| PAAD | rs112617308 | chr10:94185213 | C/T | 9.92E-6 | 174 | 15.13 | 19.87 | 4.38 | KM Plot |
| PAAD | rs112674299 | chr3:63982670 | C/T | 6.91E-11 | 172 | 15.38 | 15.77 | 2.33 | KM Plot |
| PAAD | rs112695064 | chr19:5150625 | C/A | 7.81E-6 | 178 | 15.57 | 15.35 | 3.67 | KM Plot |
| PAAD | rs112727234 | chr1:200522285 | C/T | 0 | 170 | 15.23 | 16.13 | 1.03 | KM Plot |
| PAAD | rs112810587 | chr2:70426922 | ATTTTTTATT/A | 0 | 178 | 15.37 | 17.4 | 1.03 | KM Plot |
| PAAD | rs112833123 | chr2:70412866 | C/T | 0 | 175 | 15.4 | 17.4 | 1.03 | KM Plot |